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Christoforos Nikolaou (Head of group)
Researcher, Associate Professor Level
[email protected]
https://twitter.com/guilderstern
ORCID: https://orcid.org/0000-0003-3001-6786
Detailed CV here
Full Publications List here


Originally trained in biochemistry, I hold a PhD in Molecular Biology from the University of Athens. As a PhD student and a post-doctoral fellow I have worked in Computational Gene Prediction, Genome Linguistics and Nucleosome Positioning. I joined the University of Crete in 2010 and started CG2 in 2013. My main interests lie in the fields of Genome Architecture and Evolution, Computational Epigenomics and Chromatin Structure.


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Left to right: Christoforos Nikolaou, Lambros Michalopoulos (intern), Emilios Tassion (PhD student), Athanasia Stavropoulou (PhD student), Sofia Papanikolaou (PhD student), Dimitris Nakos (MSc student) [Fleming, Spring 2023]

Lab Members


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Sofia Papanikolaou (PhD candidate)
Splicing and Genome Organization in SLE


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 Antonis Klonizakis (PhD fellow)
Chromatin Architecture during B-cell trans-differentation (joint supervision with T. Graf, CRG, Barcelona)


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Kleio-Maria Verrou (PhD candidate)
Machine Learning in Transcriptomic Studies.
(joint supervision with the University of Athens, Medical School)


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Athanasia Stavropoulou (PhD candidate)
Genome organization, transcription and gene regulation


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Aimilios Tassios (PhD candidate)
Genomic novelty in the budding yeast 


 Stylianos Mavropoulos Papoudas (PhD candidate)
Genome Arhcitecture and Gene Expression




CG2 through the years

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Fleming's first crew. Left to right: Nikos Vakirlis (post-doc), Emilios Tassios (MSc student), Antonis Klonizakis (PhD student), Gina Saranti (undergrad), Joanna Garefalaki (intern), Athanasia Stavropoulou (MSc student), Sofia Papanikolaou (PhD student), Christoforos Nikolaou. [Fleming, December 2021]
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CG2's Big Band. Left to right: Maria Kalyva (undergrad), Babis Pagonis (undergrad), Labrina Bondi (undergrad), Christoforos Nikolaou, Maria Tsochatzidou (MSc student), Vassilis Ntasis (MSc student), Nefely Paschou (MSc student), Eleni Lianoudaki (undergrad), Nina Koukourikou (undergrad), Antonis Klonizakis (MSc student), [University of Crete, Spring 2018]
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CG2 2019-2020 Biggest Crew. Left to right: Ana Quiros Moreno (Erasmus student), Sofia Argyriou (undergrad), Konstantinos Sifakis (MSc student), Ilia Varamogianni-Mamatsi (rotation student), Sofia Papanikolaou (rotation student), Eleni Lianoudaki (rotation student), Lydia Kalaitzaki (MSc student), (guest friend of the guys from a nearby lab), Antonis Klonizakis (MSc student), Emilios Tassios (undergrad), Christoforos Nikolaou [University of Crete, Fall 2019]
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CG2 Crete, the "Last Dance". Left to right: Eleni Lianoudaki (MSc student), Ilia Varamogianni-Mamatsi (MSc student), Christoforos Nikolaou, Sofia Papanikolaou (MSc student). [University of Crete, May 2020]
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CG2 at IMBB. Left to right: Christoforos Nikolaou, Antonis Klonizakis (MSc student), Ilia Varamogianni-Mamatsi (rotation student), Emilios Tassios (undergrad), Eleni Lianoudaki (rotation student), Sofia Papanikolaou (rotation student), Lydia Kalaitzaki (MSc student). [IMBB-FORTH, Autumn 2019]
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CG2 2018-2019. Lef to right: Christoforos Nikolaou, Stelios Mavropoulos Pappoudas (PhD student), Antonis Klonizakis (rotation student), Emilios Tassios (undergrad), Myrsini Dimakopoulou (rotation student), Lydia Kalaitzaki (MSc Student), Labrina Bondi (undergrad), Konstantinos Sifakis (MSc student)
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CG2 Christmas. Left to right: Christoforos Nikolaou, Eleni Lianoudaki (MSc student), Myrsini Dimakopoulou (MSc student), Ilia Varamogianni-Mamatsi (MSc student), Sofia Papanikolaou (MSc student), Emilios Tassios (rotation student), Lydia Kalaitzaki (MSc student), Sofia Argyriou (undergrad) [Old lab at UoC, Christmas 2019]
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CG2 head's birthday. Left to right: Christoforos Nikolaou, Antonis Papadakis (MSc student), Maria Malliarou (undergrad), Antonis Klonizakis (undergrad), Babis Pagonis (intern), Nina Koukourikou (undergrad), Eleni Lianoudaki (undergrad). [Old lab at UoC, February 2018]


Past members

Nikos Vakirlis (currently an independent researcher at BSRC "Alexander Fleming")
Lambros Michalopoulos (currently MSc student, Universite de Paris, Saclay)
Joanna Garefalaki
 (currently a PhD student at LMU, Germany)
Gina Saranti (currently a MSc student at Harokopeion University of Athens)

Ilia Varamogianni - Mamatsi (currently at the Papantonis lab, University of Goetingen)
Eleni Lianoudaki (currently at Pharmaten SA)
Lydia Kalaitzaki (currently Research Coordinator at the Hadjigeorgiou lab, Hellenic Pasteur Institute)
Maria Tsochatzidou (currently Junior Project Manager at Inscisol SA)
Nefely Paschou (currently Data Analyst at Saphetor SA)
Vassilis Ntassis (currently a PhD fellow at  the Guigo lab, CRG)
Maria Kalyva  (currently a PhD  student at the Ciriano lab, EBI)

Nina Koukourikou (currently a Msc student at the University of Manchester)
Andreas Aggelopoulos (currently a Msc student at the University of Pireaus)
Giorgos Koliopanos (currently a Msc student at the University of Athens)
Elpida-Themeli Neofotistoy (currently a Msc student at UoC)
Panagiotis Chouvardas (currently a post-doctoral fellow at the Johnson Lab Bern University)
Nikoletta Naoumi (currently a PhD Fellow at the UoC)
Antonis Papadakis (currently a PhD fellow at the Beyer lab, University of Cologne)
​Anna Karavaggeli (currently a PhD fellow at the Hadjigeorgiou lab, Athens Pasteur Institute)

Akis Linardos (currently a postgraduate at the UoC)
Maria Malliarou (currently a postgraduate at the UoC)
Theofilos Chalkiadakis (currently a Msc student at the University of Amsterdam)
Melivoia Rapti (currently a postgraduate at the University of Athens)
Savas Paragamian (currently a PhD fellow at the Pafilis lab, HCMR and University of Crete)
Konstantinos Klaourakis (currently a postgraduate at Oxford University)
Benjamin Papadakis (currently an undergraduate at the UoC Medical School)


Babis Pagonis
Dionysis Papazogonopoulos
Myrsini Dimakopoulou 
Labrina Bondi

Aimilios-Simoudis 

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