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so you want to be a computational biologist...

11/10/2013

2 Comments

 
This weeks Nature Biotechnology features an article by two not-exactly computational biologists offering advice on becoming one :)
The article is entitled "So you want to be a computational biologist?" and although it is rather one-sided focusing mostly on technical aspects of bioinformatics it gives a good idea of what is perceived today as "being a computational biologist". The article misses the big picture on what lies behind all the "pipelines" and the "analyses", namely the algorithmic innovations, the mathematical conceptual approach to biological problems and in general all things that are necessary before someone sits in front of terminal to "run analyses".
But what do you think of it?
Give it a read and post your comments here.
2 Comments
Costas
12/16/2013 11:28:43 pm

This is certainly a guide for NOT to be a computational biologist :-)

It started shallow... and then with this "An Obama frame of mind" it ruined everything. this kind of statements really reach the verge of ridiculous.

On individual points
1) Code tests are NOT the equivalent of positive or negative controls for gods shake... these people are "directors of bioinformatics" in respected institutions and they have an absolutely false view of what a test is.
2) I have heard so many times this colloquial argument that "your code should not look good" from people that sounds like a broken record. It is clearly something that people that have very little idea about programming can say. The rest of the paragraph works well but it starts with the totally wrong message.

(apologies for the killing of the paper...))))

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Christoforos
12/17/2013 01:55:48 am

Thanks for posting.

I agree with you in many aspects. And I also found the paper shallow (wrote so in the original post). On the bright side it's a good thing that at least people start discussing on -at least- the need for trained computational biologists. There remains the issue on whether they should be treated as math-technicians! By all means they SHOULD NOT! Still, we are at the beginning of a long road but we have to agree that things are moving on a fast pace.

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